Package org.snpsift.gwasCatalog

Class GwasCatalogEntry

  • public class GwasCatalogEntry
extends java.lang.Object
    Entry from a GWAS-catalog References: http://www.genome.gov/gwastudies/#download http://www.genome.gov/Pages/About/OD/OPG/GWAS%20Catalog/Tab_delimited_column_descriptions_09_27.pdf
    Author:
    pablocingolani

    • Field Detail

      • dateAddedtoCatalog

        public java.lang.String dateAddedtoCatalog

      • pubmedId

        public java.lang.String pubmedId

      • firstAuthor

        public java.lang.String firstAuthor

      • date

        public java.lang.String date

      • journal

        public java.lang.String journal

      • link

        public java.lang.String link

      • study

        public java.lang.String study

      • trait

        public java.lang.String trait

      • initialSampleSize

        public java.lang.String initialSampleSize

      • replicationSampleSize

        public java.lang.String replicationSampleSize

      • region

        public java.lang.String region

      • chrId

        public java.lang.String chrId

      • chrPos

        public int chrPos

      • reportedGene

        public java.lang.String reportedGene

      • mappedGene

        public java.lang.String mappedGene

      • upstreamGeneId

        public java.lang.String upstreamGeneId

      • downstreamGeneId

        public java.lang.String downstreamGeneId

      • snpGeneIds

        public java.lang.String snpGeneIds

      • upstreamGeneDistance

        public java.lang.String upstreamGeneDistance

      • downstreamGeneDistance

        public java.lang.String downstreamGeneDistance

      • riskAllele

        public java.lang.String riskAllele

      • snps

        public java.lang.String snps

      • merged

        public java.lang.String merged

      • snpIdCurrent

        public java.lang.String snpIdCurrent

      • context

        public java.lang.String context

      • intergenic

        public java.lang.String intergenic

      • riskAlleleFrequency

        public java.lang.String riskAlleleFrequency

      • pValue

        public double pValue

      • pValueMlog

        public java.lang.String pValueMlog

      • pValueText

        public java.lang.String pValueText

      • orBeta

        public java.lang.String orBeta

      • ci95

        public java.lang.String ci95

      • platform

        public java.lang.String platform

      • cnv

        public java.lang.String cnv

      • mappedTrait

        public java.lang.String mappedTrait

      • mappedTraitUri

        public java.lang.String mappedTraitUri

    • Constructor Detail

      • GwasCatalogEntry

        public GwasCatalogEntry()

    • Method Detail

      • getTraitCode

        public java.lang.String getTraitCode()
        Trait as a 'code' (only alpha-num chars)

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object