DbMarker (SnpSift 5.1 API)

All Known Implementing Classes:

DbNsfp, DbVcf, DbVcfMem, DbVcfSorted, DbVcfTabix
```
public interface DbMarker<Q extends org.snpeff.interval.Marker,R extends org.snpeff.interval.Marker>
```
Use a file as a 'marker' database. E.g. A VCF file, dbNSFP file/s, GTF, etc. Basically any genomic data file format that could be queried by genomic interval (e.g. by using Tabix, CSI or some other index).

Author:

pcingola

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`close()`	Close database, free resources
`void`	`open()`	Open database (load index in memory if required)
`java.util.Collection<R>`	`query(Q queryMarker)`	Find matching entries in the database
`void`	`setDebug(boolean debug)`
`void`	`setVerbose(boolean verbose)`

- Method Detail
  - close
```
void close()
```
    Close database, free resources
  - open
```
void open()
```
    Open database (load index in memory if required)
  - query
```
java.util.Collection<R> query(Q queryMarker)
```
    Find matching entries in the database
  - setDebug
```
void setDebug(boolean debug)
```
  - setVerbose
```
void setVerbose(boolean verbose)
```