Package org.snpeff.util

Class Log

java.lang.Object

org.snpeff.util.Log

public class Log
extends java.lang.Object

Logging

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Log.FatalErrorBehabiour

Field Summary

Fields

Modifier and Type	Field	Description
static int	MAX_ERRORS
static int	MAX_WARNINGS
protected static java.util.Map<ErrorWarningType,java.lang.Integer>	warnCount

Constructor Summary

Constructors

Constructor	Description
Log()

Method Summary

Modifier and Type	Method	Description
static void	debug(java.lang.Object obj)	Prints a debug message (prints class name, method and line number)
static void	debug(java.lang.Object obj, int offset)	Prints a debug message (prints class name, method and line number)
static void	debug(java.lang.Object obj, int offset, boolean newLine)	Prints a debug message (prints class name, method and line number)
static void	error(java.lang.String msg)	Show a warning message (up to MAX_ERRORS times)
static void	error(java.lang.Throwable e, java.lang.String message)
static void	fatalError(java.lang.String message)	Show an error message and exit
static void	fatalError(java.lang.Throwable e, java.lang.String message)
static java.util.Map<ErrorWarningType,java.lang.Integer>	getWarnCount()
static void	info(java.lang.Object msg)	Show absolute timer value and a message on STDERR
static void	infoln(java.lang.Object msg)	Show absolute timer value and a message on STDERR (prepend a newline)
static void	reset()	Reset all parameters, warning counters, silenced warningis, etc.
static void	setFatalErrorBehabiour(Log.FatalErrorBehabiour fatalErrorBehabiour)
static void	silenceWarning(ErrorWarningType warningType)
static void	warning(java.lang.String msg)
static void	warning(ErrorWarningType warnType, java.lang.String msg)	Show a warning message (up to MAX_ERRORS times)
static void	warningln(java.lang.String msg)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MAX_WARNINGS

public static final int MAX_WARNINGS

See Also:

Constant Field Values

MAX_ERRORS

public static final int MAX_ERRORS

See Also:

Constant Field Values

warnCount

protected static java.util.Map<ErrorWarningType,java.lang.Integer> warnCount

Constructor Detail

Log

public Log()

Method Detail

debug

public static void debug(java.lang.Object obj)

Prints a debug message (prints class name, method and line number)

debug

public static void debug(java.lang.Object obj,
                         int offset)

Prints a debug message (prints class name, method and line number)

debug

public static void debug(java.lang.Object obj,
                         int offset,
                         boolean newLine)

Prints a debug message (prints class name, method and line number)

error

public static void error(java.lang.String msg)

Show a warning message (up to MAX_ERRORS times)

error

public static void error(java.lang.Throwable e,
                         java.lang.String message)

fatalError

public static void fatalError(java.lang.String message)

Show an error message and exit

fatalError

public static void fatalError(java.lang.Throwable e,
                              java.lang.String message)

getWarnCount

public static java.util.Map<ErrorWarningType,java.lang.Integer> getWarnCount()

info

public static void info(java.lang.Object msg)

Show absolute timer value and a message on STDERR

infoln

public static void infoln(java.lang.Object msg)

Show absolute timer value and a message on STDERR (prepend a newline)

reset

public static void reset()

Reset all parameters, warning counters, silenced warningis, etc.

setFatalErrorBehabiour

public static void setFatalErrorBehabiour(Log.FatalErrorBehabiour fatalErrorBehabiour)

silenceWarning

public static void silenceWarning(ErrorWarningType warningType)

warning

public static void warning(java.lang.String msg)

warningln

public static void warningln(java.lang.String msg)

warning

public static void warning(ErrorWarningType warnType,
                           java.lang.String msg)

Show a warning message (up to MAX_ERRORS times)