Uses of Class
org.snpeff.stats.CountByType

Packages that use CountByType

Package	Description
org.snpeff.coverage
org.snpeff.interval
org.snpeff.nextProt
org.snpeff.stats

Uses of CountByType in org.snpeff.coverage

Methods in org.snpeff.coverage that return CountByType

Modifier and Type	Method	Description
CountByType	CountReads.getCountTypes()

Methods in org.snpeff.coverage with parameters of type CountByType

Modifier and Type	Method	Description
java.lang.String	CountReadsOnMarkers.probabilityTable(CountByType prob)	Show probabilities

Uses of CountByType in org.snpeff.interval

Methods in org.snpeff.interval that return CountByType

Modifier and Type	Method	Description
CountByType	ExonSpliceCharacterizer.characterize()	Characterize all exons

Uses of CountByType in org.snpeff.nextProt

Methods in org.snpeff.nextProt that return CountByType

Modifier and Type	Method	Description
CountByType	NextProtHandler.getMissingCategories()

Uses of CountByType in org.snpeff.stats

Methods in org.snpeff.stats that return CountByType

Modifier and Type	Method	Description
CountByType	ReadsOnMarkersModel.getCountBases()
CountByType	VariantStats.getCountByChangeType()	Number of variants by type
CountByType	VariantEffectStats.getCountByEffect()
CountByType	VariantEffectStats.getCountByFunctionalClass()
CountByType	VariantEffectStats.getCountByGeneRegion()
CountByType	VariantEffectStats.getCountByImpact()
CountByType	GeneCountByTypeTable.getCounter(java.lang.String type)	Get counter for this type
CountByType	GeneCountByTypeTable.getCounterSize(java.lang.String type)	Get size counter for this type
CountByType	ReadsOnMarkersModel.getCountMarkers()
CountByType	ReadsOnMarkersModel.getProb()
CountByType	ReadsOnMarkersModel.getRawCountBases()
CountByType	ReadsOnMarkersModel.getRawCountMarkers()