Package org.snpeff.snpEffect.testCases.integration

Class CompareToEnsembl

  • public class CompareToEnsembl
extends java.lang.Object
    Compare our results to ENSEML's Variant Effect predictor's output
    Author:
    pcingola

    • Constructor Summary

      Constructors 
      Constructor Description
      CompareToEnsembl​(java.lang.String genomeName, boolean throwException)  

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void compareEnsembl​(java.lang.String ensemblFile, java.lang.String trName)
      Compare our results to some ENSEMBL annotations
      static void main​(java.lang.String[] args)
      Main
      void setVerbose​(boolean verbose)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • CompareToEnsembl

        public CompareToEnsembl​(java.lang.String genomeName,
                        boolean throwException)

    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
        Main

      • compareEnsembl

        public void compareEnsembl​(java.lang.String ensemblFile,
                           java.lang.String trName)
        Compare our results to some ENSEMBL annotations

      • setVerbose

        public void setVerbose​(boolean verbose)