Uses of Class
org.snpeff.snpEffect.ErrorWarningType

Packages that use ErrorWarningType

Package	Description
org.snpeff.interval
org.snpeff.snpEffect
org.snpeff.snpEffect.testCases.integration
org.snpeff.util

Uses of ErrorWarningType in org.snpeff.interval

Methods in org.snpeff.interval that return ErrorWarningType

Modifier and Type	Method	Description
ErrorWarningType	Exon.sanityCheck(Variant variant)	Check that the base in the exon corresponds with the one in the SNP
ErrorWarningType	Transcript.sanityCheck(Variant variant)	Perfom some baseic chekcs, return error type, if any

Uses of ErrorWarningType in org.snpeff.snpEffect

Methods in org.snpeff.snpEffect that return ErrorWarningType

Modifier and Type	Method	Description
static ErrorWarningType	ErrorWarningType.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static ErrorWarningType[]	ErrorWarningType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.snpeff.snpEffect with parameters of type ErrorWarningType

Modifier and Type	Method	Description
void	VariantEffect.addErrorMessage(ErrorWarningType errmsg)
void	VariantEffects.addErrorWarning(Variant variant, ErrorWarningType errwarn)
void	VariantEffect.addErrorWarningInfo(ErrorWarningType errwarn)	Add an error or warning
void	VariantEffect.addInfoMessage(ErrorWarningType infomsg)
void	VariantEffect.addWarningMessge(ErrorWarningType warnmsg)

Uses of ErrorWarningType in org.snpeff.snpEffect.testCases.integration

Methods in org.snpeff.snpEffect.testCases.integration with parameters of type ErrorWarningType

Modifier and Type	Method	Description
void	TestCasesIntegrationBase.checkTranscriptError(java.lang.String[] args, ErrorWarningType warningType)	Run a predictor and check if the expected warnings appear

Uses of ErrorWarningType in org.snpeff.util

Fields in org.snpeff.util with type parameters of type ErrorWarningType

Modifier and Type	Field	Description
protected static java.util.Map<ErrorWarningType,java.lang.Integer>	Log.warnCount

Methods in org.snpeff.util that return types with arguments of type ErrorWarningType

Modifier and Type	Method	Description
static java.util.Map<ErrorWarningType,java.lang.Integer>	Log.getWarnCount()

Methods in org.snpeff.util with parameters of type ErrorWarningType

Modifier and Type	Method	Description
static void	Log.silenceWarning(ErrorWarningType warningType)
static void	Log.warning(ErrorWarningType warnType, java.lang.String msg)	Show a warning message (up to MAX_ERRORS times)