Package org.snpeff.pdb

Class IdMapperEntry

  • All Implemented Interfaces:
    java.lang.Cloneable, java.lang.Comparable<IdMapperEntry>
    public class IdMapperEntry
extends java.lang.Object
implements java.lang.Cloneable, java.lang.Comparable<IdMapperEntry>
    An entry in a ID mapping file
    Author:
    pcingola

    • Constructor Summary

      Constructors 
      Constructor Description
      IdMapperEntry​(java.lang.String pdbId, java.lang.String trId)  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      IdMapperEntry cloneAndSet​(java.lang.String chainId, int pdbAaLen, int trAaLen)
      Clone the object and return a copy having a different chain ID
      int compareTo​(IdMapperEntry o)  
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Field Detail

      • trId

        public java.lang.String trId

      • pdbId

        public java.lang.String pdbId

      • pdbChainId

        public java.lang.String pdbChainId

      • pdbAaLen

        public int pdbAaLen

      • trAaLen

        public int trAaLen

    • Constructor Detail

      • IdMapperEntry

        public IdMapperEntry​(java.lang.String pdbId,
                     java.lang.String trId)

    • Method Detail

      • cloneAndSet

        public IdMapperEntry cloneAndSet​(java.lang.String chainId,
                                 int pdbAaLen,
                                 int trAaLen)
        Clone the object and return a copy having a different chain ID

      • compareTo

        public int compareTo​(IdMapperEntry o)
        Specified by:
        compareTo in interface java.lang.Comparable<IdMapperEntry>

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object