Package org.snpeff.nextProt

Class LocationTargetIsoformInteraction

java.lang.Object

org.snpeff.nextProt.Location

org.snpeff.nextProt.LocationTargetIsoform

org.snpeff.nextProt.LocationTargetIsoformInteraction

public class LocationTargetIsoformInteraction
extends LocationTargetIsoform

A location respect to two locations within an isoform In this case "start" and "end" are not really an interval, but an interaction between two locations (e.g. disulphide bond)

Field Summary

Fields inherited from class org.snpeff.nextProt.LocationTargetIsoform

accession

Fields inherited from class org.snpeff.nextProt.Location

begin, end, type

Constructor Summary

Constructors

Constructor	Description
LocationTargetIsoformInteraction(java.lang.String accession, int begin, int end)
LocationTargetIsoformInteraction(LocationTargetIsoform loc)

Method Summary

Modifier and Type	Method	Description
boolean	isInteraction()
java.lang.String	toString()

Methods inherited from class org.snpeff.nextProt.LocationTargetIsoform

isIsoform

Methods inherited from class org.snpeff.nextProt.Location

isValid

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

LocationTargetIsoformInteraction

public LocationTargetIsoformInteraction(LocationTargetIsoform loc)

LocationTargetIsoformInteraction

public LocationTargetIsoformInteraction(java.lang.String accession,
                                        int begin,
                                        int end)

Method Detail

isInteraction

public boolean isInteraction()

Overrides:

isInteraction in class Location

toString

public java.lang.String toString()

Overrides:

toString in class LocationTargetIsoform