Uses of Class
org.snpeff.motif.Pwm

Packages that use Pwm

Package	Description
org.snpeff.interval
org.snpeff.motif

Uses of Pwm in org.snpeff.interval

Methods in org.snpeff.interval that return Pwm

Modifier and Type	Method	Description
Pwm	Motif.getPwm()

Methods in org.snpeff.interval with parameters of type Pwm

Modifier and Type	Method	Description
void	Motif.setPwm(Pwm pwm)

Uses of Pwm in org.snpeff.motif

Subclasses of Pwm in org.snpeff.motif

Modifier and Type	Class	Description
class	PwmAndSeqs	Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.

Methods in org.snpeff.motif that return Pwm

Modifier and Type	Method	Description
Pwm	Jaspar.getPwm(java.lang.String pwmId)

Methods in org.snpeff.motif that return types with arguments of type Pwm

Modifier and Type	Method	Description
java.util.Iterator<Pwm>	Jaspar.iterator()

Constructors in org.snpeff.motif with parameters of type Pwm

Constructor	Description
MotifLogo(Pwm pwm)