Uses of Class
org.snpeff.interval.Variant.VariantType

Packages that use Variant.VariantType

Package	Description
org.snpeff.align
org.snpeff.interval
org.snpeff.snpEffect.testCases.unity
org.snpeff.stats

Uses of Variant.VariantType in org.snpeff.align

Methods in org.snpeff.align that return Variant.VariantType

Modifier and Type	Method	Description
Variant.VariantType	VcfRefAltAlign.getVariantType()

Methods in org.snpeff.align with parameters of type Variant.VariantType

Modifier and Type	Method	Description
void	VcfRefAltAlign.setVariantType(Variant.VariantType variantType)

Uses of Variant.VariantType in org.snpeff.interval

Fields in org.snpeff.interval declared as Variant.VariantType

Modifier and Type	Field	Description
protected Variant.VariantType	Variant.variantType

Methods in org.snpeff.interval that return Variant.VariantType

Modifier and Type	Method	Description
Variant.VariantType	Variant.getVariantType()
static Variant.VariantType	Variant.VariantType.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static Variant.VariantType[]	Variant.VariantType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.snpeff.interval with parameters of type Variant.VariantType

Modifier and Type	Method	Description
void	Variant.setVariantType(Variant.VariantType variantType)

Uses of Variant.VariantType in org.snpeff.snpEffect.testCases.unity

Methods in org.snpeff.snpEffect.testCases.unity with parameters of type Variant.VariantType

Modifier and Type	Method	Description
void	TestCasesBase.checkApply(Variant variant, Variant.VariantType varType, java.lang.String expectedCds, java.lang.String expectedProtein, int exonRank, int expectedExon1Start, int expectedExon1End)	Apply a variant to a transcript and check resulting CDS sequence, protein sequence and exon coordinates

Uses of Variant.VariantType in org.snpeff.stats

Methods in org.snpeff.stats that return Variant.VariantType

Modifier and Type	Method	Description
Variant.VariantType[]	VariantStats.getChangeType()