Uses of Class
org.snpeff.interval.Utr

Packages that use Utr

Package	Description
org.snpeff.interval

Uses of Utr in org.snpeff.interval

Subclasses of Utr in org.snpeff.interval

Modifier and Type	Class	Description
class	Utr3prime	Interval for a UTR (5 prime UTR and 3 prime UTR
class	Utr5prime	Interval for a UTR (5 prime UTR and 3 prime UTR

Methods in org.snpeff.interval that return Utr

Modifier and Type	Method	Description
Utr	Transcript.findUtr(int pos)	Return the UTR that hits position 'pos'

Methods in org.snpeff.interval that return types with arguments of type Utr

Modifier and Type	Method	Description
java.util.List<Utr>	Transcript.findUtrs(Marker marker)	Return the UTR that intersects 'marker' (null if not found)
java.util.List<Utr>	Transcript.getUtrs()	Get all UTRs

Methods in org.snpeff.interval with parameters of type Utr

Modifier and Type	Method	Description
void	Transcript.add(Utr utr)	Add a UTR