Uses of Class
org.snpeff.interval.Intron
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Packages that use Intron Package Description org.snpeff.interval org.snpeff.snpEffect org.snpeff.svg -
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Uses of Intron in org.snpeff.interval
Methods in org.snpeff.interval that return Intron Modifier and Type Method Description IntronIntron. apply(Variant variant)IntronIntron. cloneShallow()IntronTranscript. findIntron(int pos)Return an intron overlapping position 'pos'Methods in org.snpeff.interval that return types with arguments of type Intron Modifier and Type Method Description java.util.List<Intron>Transcript. introns()Get all introns (lazy init)Methods in org.snpeff.interval with parameters of type Intron Modifier and Type Method Description voidTranscript. add(Intron intron)Add an intronConstructors in org.snpeff.interval with parameters of type Intron Constructor Description SpliceSite(Intron parent, int start, int end, boolean strandMinus, java.lang.String id)SpliceSiteAcceptor(Intron parent, int start, int end, boolean strandMinus, java.lang.String id)SpliceSiteBranch(Intron parent, int start, int end, boolean strandMinus, java.lang.String id)SpliceSiteBranchU12(Intron parent, int start, int end, boolean strandMinus, java.lang.String id)SpliceSiteDonor(Intron parent, int start, int end, boolean strandMinus, java.lang.String id)SpliceSiteRegion(Intron parent, int start, int end, boolean strandMinus, java.lang.String id) -
Uses of Intron in org.snpeff.snpEffect
Methods in org.snpeff.snpEffect that return Intron Modifier and Type Method Description IntronVariantEffect. getIntron()Get intron (if any)Methods in org.snpeff.snpEffect with parameters of type Intron Modifier and Type Method Description protected java.lang.StringHgvsDna. posIntron(int pos, Intron intron)Intronic position -
Uses of Intron in org.snpeff.svg
Constructors in org.snpeff.svg with parameters of type Intron Constructor Description SvgIntron(Intron intron, Svg svg)
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