Uses of Class
org.snpeff.geneSets.algorithm.EnrichmentAlgorithm

Packages that use EnrichmentAlgorithm

Package	Description
org.snpeff.geneSets.algorithm

Uses of EnrichmentAlgorithm in org.snpeff.geneSets.algorithm

Subclasses of EnrichmentAlgorithm in org.snpeff.geneSets.algorithm

Modifier and Type	Class	Description
class	EnrichmentAlgorithmGreedy	A generic greedy enrichment algorithm for selecting gene-sets
class	EnrichmentAlgorithmGreedyVariableSize	A greedy enrichment algorithm for selecting gene-sets using a variable geneSet-size strategy: i) Select only from geneSets in low-sizes e.g.
class	FisherPValueAlgorithm
class	FisherPValueGreedyAlgorithm
class	LeadingEdgeFractionAlgorithm	Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"
class	NoneAlgorithm	An algorithm that does nothing
class	RankSumPValueAlgorithm
class	RankSumPValueGreedyAlgorithm