MicroCosmEntry (SnpEff 5.1 API)

java.lang.Object
- org.snpeff.fileIterator.microCosm.MicroCosmEntry

```
public class MicroCosmEntry
extends java.lang.Object
```
Entry in a MicroCosm (miRNA target prediction) file

Author:

pablocingolani

Field Summary

Fields
Modifier and Type	Field	Description
`java.lang.String`	`chr`
`int`	`end`
`java.lang.String`	`externalName`
`java.lang.String`	`feature`
`java.lang.String`	`group`
`java.lang.String`	`method`
`java.lang.String`	`miRnaName`
`java.lang.String`	`phase`
`double`	`pValue`
`double`	`score`
`int`	`start`
`java.lang.String`	`strand`
`java.lang.String`	`transcriptId`

Constructor Summary

Constructors
Constructor Description

MicroCosmEntry()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`MicroRnaBindingSite`	`getMarker(Genome genome)`	Create a MicroRnaBindingSite marker
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

group
```
public java.lang.String group
```

miRnaName
```
public java.lang.String miRnaName
```

method
```
public java.lang.String method
```

feature
```
public java.lang.String feature
```

chr
```
public java.lang.String chr
```

start
```
public int start
```

end
```
public int end
```

strand
```
public java.lang.String strand
```

phase
```
public java.lang.String phase
```

score
```
public double score
```

pValue
```
public double pValue
```

transcriptId
```
public java.lang.String transcriptId
```

externalName
```
public java.lang.String externalName
```

Constructor Detail
- MicroCosmEntry
```
public MicroCosmEntry()
```

Method Detail
- getMarker
```
public MicroRnaBindingSite getMarker(Genome genome)
```
  Create a MicroRnaBindingSite marker
  
  Returns:
- toString
```
public java.lang.String toString()
```
  Overrides:
  
  toString in class java.lang.Object