Package org.snpeff.fastq

Class FastqTools

  • public class FastqTools
extends java.lang.Object
    Simple maipulation of fastq sequences
    Author:
    pcingola

    • Constructor Summary

      Constructors 
      Constructor Description
      FastqTools()  

    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static int[] qualtityArray​(org.biojava.nbio.genome.io.fastq.Fastq fastq)
      Create an array of integers describing quality

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • FastqTools

        public FastqTools()

    • Method Detail

      • qualtityArray

        public static int[] qualtityArray​(org.biojava.nbio.genome.io.fastq.Fastq fastq)
        Create an array of integers describing quality