Uses of Interface
org.snpeff.binseq.indexer.OverlapFilter

Packages that use OverlapFilter

Package	Description
org.snpeff.binseq.indexer

Uses of OverlapFilter in org.snpeff.binseq.indexer

Classes in org.snpeff.binseq.indexer that implement OverlapFilter

Modifier and Type	Class	Description
class	OverlapFilterCompareAllAll	Only allow overlaps between sequences mapped to same/different partition
class	OverlapFilterDnaId	Only allow sequences with different IDs to be overlapped

Methods in org.snpeff.binseq.indexer that return OverlapFilter

Modifier and Type	Method	Description
OverlapFilter<T>	SuffixIndexerNmer.getOverlapFilter()

Methods in org.snpeff.binseq.indexer with parameters of type OverlapFilter

Modifier and Type	Method	Description
void	SuffixIndexerNmer.setOverlapFilter(OverlapFilter<T> overlapFilter)