Uses of Class
org.snpeff.binseq.coder.Coder

Packages that use Coder

Package	Description
org.snpeff.binseq
org.snpeff.binseq.coder
org.snpeff.overlap

Uses of Coder in org.snpeff.binseq

Fields in org.snpeff.binseq declared as Coder

Modifier and Type	Field	Description
static Coder	DnaSequencePe.coder

Methods in org.snpeff.binseq that return Coder

Modifier and Type	Method	Description
abstract Coder	BinarySequence.getCoder()	Get sequence encoder & decoder
Coder	DnaAndQualitySequence.getCoder()
Coder	DnaSequence.getCoder()
Coder	DnaSequencePe.getCoder()

Uses of Coder in org.snpeff.binseq.coder

Subclasses of Coder in org.snpeff.binseq.coder

Modifier and Type	Class	Description
class	DnaCoder	Class used to encode & decode sequences into binary and vice-versa Note:This is a singleton class.
class	DnaQualityCoder	Class used to encode & decode sequences into binary and vice-versa - Every base is encoded in 8 bits: - Six bits for the base quality [0 , ..

Uses of Coder in org.snpeff.overlap

Constructors in org.snpeff.overlap with parameters of type Coder

Constructor	Description
BasesChangeCounter(Coder coder)