FisherStrandFilter (picard 2.18.25 API)

java.lang.Object
- picard.vcf.filter.FisherStrandFilter

All Implemented Interfaces:

VariantFilter
```
public class FisherStrandFilter
extends Object
implements VariantFilter
```
Filters records based on the phred scaled p-value from the Fisher Strand test stored in the FS attribute.

Constructor Summary

Constructors
Constructor Description

FisherStrandFilter(double maxPhredScalePValue)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`filter(htsjdk.variant.variantcontext.VariantContext ctx)`	Check to see if the VariantContext should have a filter applied to it.
`List<htsjdk.variant.vcf.VCFFilterHeaderLine>`	`headerLines()`	Return VCF header lines that define filters that may be applied by the VariantFilter.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - FisherStrandFilter
```
public FisherStrandFilter(double maxPhredScalePValue)
```
- Method Detail
  - headerLines
```
public List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()
```
    Description copied from interface: VariantFilter
    
    Return VCF header lines that define filters that may be applied by the VariantFilter.
    
    Specified by:
    
    headerLines in interface VariantFilter
  - filter
```
public String filter(htsjdk.variant.variantcontext.VariantContext ctx)
```
    Description copied from interface: VariantFilter
    
    Check to see if the VariantContext should have a filter applied to it. If so return the filter string, otherwise return null.
    
    Specified by:
    
    filter in interface VariantFilter