Package picard.sam.SamErrorMetric
Interface ReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>
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- Type Parameters:
T-
- All Known Implementing Classes:
ReadBaseStratification.BinnedReadCycleStratifier,ReadBaseStratification.CollectionStratifier,ReadBaseStratification.ConsensusStratifier,ReadBaseStratification.FlowCellTileStratifier,ReadBaseStratification.GCContentStratifier,ReadBaseStratification.LongShortHomopolymerStratifier,ReadBaseStratification.MismatchesInReadStratifier,ReadBaseStratification.NsInReadStratifier,ReadBaseStratification.PairStratifier
- Enclosing class:
- ReadBaseStratification
public static interface ReadBaseStratification.RecordAndOffsetStratifier<T extends Comparable<T>>The main interface for a stratifier. The Stratifier needs to be able to ake aRecordAndOffsetand return a value of type T. It also needs to have a suffix for automatically generating metrics file suffixes.
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description StringgetSuffix()Tstratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
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