Uses of Class
com.actelion.research.chem.phesa.Gaussian3D

Packages that use Gaussian3D

Package	Description
com.actelion.research.chem.phesa
com.actelion.research.chem.phesa.pharmacophore.pp
com.actelion.research.chem.phesaflex

Uses of Gaussian3D in com.actelion.research.chem.phesa

Subclasses of Gaussian3D in com.actelion.research.chem.phesa

Modifier and Type	Class	Description
class	AtomicGaussian
class	VolumeGaussian

Methods in com.actelion.research.chem.phesa with parameters of type Gaussian3D

Modifier and Type	Method	Description
double	Gaussian3D.getVolumeOverlap(Gaussian3D g2)
double	Gaussian3D.getVolumeOverlap(Gaussian3D g2, double distCutoff)
double	Gaussian3D.getVolumeOverlap(Gaussian3D g2, Coordinates c2, double distCutoff)

Method parameters in com.actelion.research.chem.phesa with type arguments of type Gaussian3D

Modifier and Type	Method	Description
protected static void	ShapeVolume.rotateGaussian(java.util.List<? extends Gaussian3D> gaussians, double[][] rot)
protected static void	ShapeVolume.rotateGaussians180DegreeAroundAxis(java.util.List<? extends Gaussian3D> gaussians, PheSAAlignment.axis a)
protected static void	ShapeVolume.transformGaussians(java.util.List<? extends Gaussian3D> gaussians, Transformation transform)
protected void	ShapeVolume.updateCoordinates(java.util.List<? extends Gaussian3D> gaussians, Coordinates[] coords)

Constructors in com.actelion.research.chem.phesa with parameters of type Gaussian3D

Constructor	Description
Gaussian3D(Gaussian3D original)

Uses of Gaussian3D in com.actelion.research.chem.phesa.pharmacophore.pp

Subclasses of Gaussian3D in com.actelion.research.chem.phesa.pharmacophore.pp

Modifier and Type	Class	Description
class	PPGaussian

Uses of Gaussian3D in com.actelion.research.chem.phesaflex

Methods in com.actelion.research.chem.phesaflex with parameters of type Gaussian3D

Modifier and Type	Method	Description
double	EvaluableFlexibleOverlap.getGradientContribution(Gaussian3D refAt, Gaussian3D fitAt, double[] grad, boolean rigid)